Galápagos Island Hopping from Quito

An Unfiltered Travel Guide & Photo Diary

Galápagos Island Hopping from Quito

Locking in the two-hour speedboat ride from Floreana to Isabela on Day 5 is the critical timing decision on this route. Missing this connection delays the hike on the Sierra Negra Volcano. The crossing depends on landing at Baltra Island on Day 2, followed by the overland and ferry route to Puerto Ayora.

A nine-day route from Quito that uses a land-based, island-hopping approach to the Galápagos. The trip moves between Santa Cruz, Floreana, and Isabela islands, with a focus on local guesthouses and wildlife encounters.

The Route, Day by Day

Each leg of the journey mapped out — where the day takes you, what's actually on the ground, and things to consider when planning this trip yourself.

How to read this guide

  • The routeWritten as you'd travel it independently — where each day goes and what is actually on the ground.
  • DIY Reality CheckWhere doing it yourself gets hard: permits, closures, bookings that sell out months ahead.
  • G Adventures includesThe same route as one 9-day trip, booked start to finish — you can't buy a single day of it. These panels show what their price covers each day, so you can weigh it against doing it yourself.

Quito

Arrival in Quito

Day 1 of 9

Arrive at any time into Quito's Mariscal Sucre International Airport (UIO). The day is unstructured, leaving time to find your hotel and acclimatize to the city's 2,850m elevation. Depending on arrival time, a walk through the neighborhood is a good way to get oriented before the island portion of the trip begins.

On the ground

  • Arrival day in Quito
  • Settle in and acclimatize to the altitude
  • Where you stay: Hotel Eugenia

Quito/Puerto Ayora

Flight to the Galápagos & Darwin Station

Day 2 of 9

A morning transfer leads to the Quito airport for the flight to the Galápagos. Landing on Baltra Island, a small, arid outcrop, the journey continues overland and by ferry to the town of Puerto Ayora on Santa Cruz Island. The first stop is the Charles Darwin Research Station, a scientific outpost and breeding center. It's a solid introduction to the islands' conservation work and a chance to see Galápagos giant tortoises up close, from young hatchlings to full-grown adults in a protected corral.

On the ground

  • Flight from Quito to Baltra Island
  • Visit the Fausto Llerena Breeding Center
  • Explore the Charles Darwin Research Station
  • Where you stay: Hotel Dejavu

Puerto Ayora/Floreana Island

Las Grietas Lagoon & Floreana Island

Day 3 of 9

The morning starts with a walk across Academy Bay to Las Grietas, a striking swimming hole set between two volcanic cliffs. The trail cuts through a cactus forest, home to Darwin finches and lava lizards. The water here is a mix of fresh and salt, clear and cool. In the afternoon, a speedboat makes the crossing to Floreana Island, a trip that can be rough, particularly from July to December. Accommodations are in community-run guesthouses, with meals served at local family restaurants—a system designed to distribute tourism income among the island's 150 residents.

On the ground

  • Hike through a cactus forest to Las Grietas lagoon
  • Swim in the brackish water of a volcanic fissure
  • Speedboat transfer to Floreana Island
  • Where you stay: a community-run guesthouse on Floreana
  • Dinner at a community restaurant
  • Where you stay: Floreana Community Guesthouse

Floreana Island

Floreana Highlands & Black-Sand Beaches

Day 4 of 9

A walk along Floreana's black-sand beach leads to La Lobería, a sea lion colony where you can swim or watch the animals from the shore. The day's main event is an excursion into the island's seldom-visited highlands. A guided walk through the humid landscape focuses on spotting local birdlife and learning the island's human history, which is thick with stories of pirates, whalers, and early colonists who sought refuge on this isolated patch of land. All meals are provided by the island's rotating community restaurant program.

On the ground

  • Walk to La Lobería sea lion colony along a black-sand beach
  • Guided excursion into the Floreana highlands (2-3h)
  • Learn about the island's pirate and whaler history
  • Where you stay: Floreana Community Guesthouse

Floreana Island/Isabela Island

Volcano Hike on Isabela Island

Day 5 of 9

The day begins with a two-hour speedboat ride from Floreana to Isabela, the largest island in the archipelago. After checking in, the main activity is a hike on the Sierra Negra Volcano. The trail climbs to the rim of the volcano's caldera, which at 10km across is one of the largest in the world. The landscape is a stark field of black lava from its most recent eruption in 2018. From the summit, the views stretch across the caldera and out to the surrounding volcanoes and nearby islands.

On the ground

  • Speedboat transfer to Isabela Island (2-2.5h)
  • Hike to the rim of Sierra Negra Volcano (1-2h)
  • Walk around the largest basaltic caldera in the Galápagos
  • Views of the surrounding volcanoes and islands
  • Where you stay: Hotel Iguana

Isabela Island

Giant Tortoises & Reef Sharks

Day 6 of 9

The morning on Isabela is free for independent exploration. One option is a boat trip out to Islote Tintoreras, a small islet where white-tip reef sharks rest in a lava channel and marine iguanas, blue-footed boobies, and penguins are common sights. Later, a walk through the town's wetlands—a good spot for observing pink flamingos—leads to the Giant Tortoise Breeding Centre. The center was established to help restore the island's tortoise populations, and it's possible to see the animals at various stages of life.

On the ground

  • Optional boat trip to 'Islote Tintoreras' to see reef sharks
  • Visit the Giant Tortoise Breeding Centre (1-2h)
  • Walk to wetlands to observe pink flamingos
  • Where you stay: Hotel Iguana

Isabela Island/Puerto Ayora

Return to Santa Cruz & Tortuga Bay

Day 7 of 9

A morning speedboat carries you from Isabela back to Santa Cruz Island and the town of Puerto Ayora. The afternoon is spent at Tortuga Bay, reached via an 8km walk along a lava stone path. The bay itself is a long stretch of fine white sand, perfect for relaxing or swimming in the turquoise water. It's also possible to rent a kayak to explore the mangroves, looking for marine iguanas, sea turtles, and rays in the shallows. The evening is free to explore Puerto Ayora's waterfront restaurants and shops.

On the ground

  • Speedboat transfer to Santa Cruz Island (2-3h)
  • Hike a lava stone pathway to Tortuga Bay (8km)
  • Where you stay: Hotel Dejavu

Puerto Ayora/Quito

Flight Back to the Mainland

Day 8 of 9

The Galápagos portion of the trip ends today. Retrace the route from Puerto Ayora back to Baltra Island for the return flight to Quito. Upon arrival in the capital, a transfer leads to a hotel for one last night. The evening is free to revisit a favorite spot or explore a new part of the city. Booking extra nights in Quito is a good idea for anyone wanting to explore the city or its surroundings more deeply.

On the ground

  • Travel from Puerto Ayora to Baltra Island
  • Flight from Baltra to Quito
  • Final evening in the capital city
  • Where you stay: Hotel Eugenia

Quito

Departure from Quito

Day 9 of 9

This is a departure day with no planned activities. Pack up and make your way to Mariscal Sucre International Airport (UIO) for your flight home. It is generally wise not to book flights that depart before the afternoon, in case of any delays on the return from the islands.

On the ground

  • Departure day
  • Depart at any time from Quito

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Book Galápagos Island Hopping by G Adventures.

From $3,039 USD $3,799 · 9 days · max 16 travelers · Hotels, round-trip flight from Quito, boat transfers, select meals

trip code SEQI · routes directly to G Adventures · 90-day cookie

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